Function reference
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MetaboTandemApp() - MetaboTandem UI
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alignSpectraUI() - Align spectra UI
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annotate_CAMERA() - Adduct annotation with CAMERA
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annotate_SIRIUS() - Annotate MS2 using SIRIUS
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annotationappUI() - Solo annotation UI `
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apply_alignment() - Apply Peak alignment
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apply_correspondence() - Apply Peak Correspondence
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apply_gap_filling() - Apply Gap Filling
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apply_peak_picking() - Apply Peak Picking
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apply_peak_refinement() - Apply Peak Refinement
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autotunerUI() - Autotuner UI `
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calculate_bpc() - Calculate BPC
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calculate_tic() - Calculate TIC
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centroid_check() - Check centroided
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colorPickerUI() - ColorPickerUI
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create_col_vector() - Create color vectors
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create_gnps_db() - Create GNPS annotation database
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create_massbank_db() - Create massbank annotation database
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create_mona_db() - Create MoNA annotation database
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cycloess.norm() - Cyclic LOESS normalization
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dbAnnotationServer() - Database annotation server
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dbAnnotationUI() - Annotation UI `
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diffExpressionUI() - Ui for differential expression analysis
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download_ResultspreprocUI() - Download results (preprocessing) UI
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extract_MS2_consensus() - Extract MS2 data
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extract_autotuner() - Extract parameters AutoTuner
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extract_feature_definition() - Extract feature definitions
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extract_features() - Extract features
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extract_number_peaks() - Extract number of peaks
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extract_spectra_table() - Extract spectra table
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fix_entries() - Rearrange entries in annotation table
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gapFillingUI() - Gap fill UI
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global.norm() - Global are under the curve normalization
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home_ui - Homepage UI
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identify_peak() - Identify metabolites based on MS1 or MS/MS database
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load_dataServer() - Load data server-side processing
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load_dataUI() - Load data UI
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load_spectra_data() - Load Spectra data
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max(<norm>) - Max normalization
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mean(<norm>) - Mean Normalzation Function to apply global mean normalization to the data
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median(<norm>) - Median Normalization
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merge_SIRIUS_files() - Merge SIRIUS annotation
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metadataServer() - Metadata uploading server-side processing
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metadataUI() - Metadata uploading UI
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mod_get_identification_table() - Modified - Get identification table
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mod_identify_all() - Modified - Identify metabolites using multiple databases
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mod_metIdentify() - Modified - Identify metabolites using
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multivariateUI() - Perform multivariate Analysis
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nmds_ordination() - Function to calculate NMDS
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norm_methods_all() - Function to apply any normalization method required
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normalize_by_all() - Test normalization methods
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old_MetaboTandemApp() - MetaboTandem UI
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parse_ms2_for_SIRIUS() - Function to parse ms2 data to work with SIRIUS
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peakPickingServer() - Peak picking server-side processing
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peakPickingUI() - Peak picking spectra UI `
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read_mgf() - Read mgf data
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read_msp() - Read msp data
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rp_data - Spectra data for RP LC-MS/MS experiment
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separate_MS2() - Separate MGF into groups
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siriusAnnotationServer() - Database annotation server
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siriusAnnotationUI() - Annotation using SIRIUS UI `
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spectraServer() - Spectra uploading server-side processing
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spectraUI() - Spectra uploading UI
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start_autotuner() - Start autotuner
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statsSetupUI() - Set options for statistical analysis
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test_peak_picking() - Test peak picking
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ui_main() - MetaboTandem UI
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vsn.norm() - Variance stabilization normalization Function to apply variance stabilization normalization to the data