Multivariate analysis - Plot Ordination — plot

Function to plot ordination results

Usage

plot_ordination(
  ord_object,
  metadata,
  group_by,
  add_sample_names = FALSE,
  add_variables = FALSE,
  add_ellipse = FALSE,
  color_vector = NULL,
  abundances = NULL,
  plot = TRUE
)

plot_ordination.nmds(
  ord_object,
  metadata,
  group_by,
  add_sample_names,
  add_variables,
  add_ellipse,
  color_vector,
  abundances,
  plot
)

plot_ordination.pca(
  ord_object,
  metadata,
  group_by,
  add_sample_names,
  add_variables,
  add_ellipse,
  color_vector,
  plot
)

plot_ordination.pcoa(
  ord_object,
  metadata,
  group_by,
  add_sample_names,
  add_variables,
  add_ellipse,
  color_vector,
  abundances,
  plot
)

Arguments

ord_onj: Feature abundance table
method: Ordination method
distance: Dissimilarity distance to calculate. Available options are those from vegan::vegdist()

Value

Object returned depend on the selected method