Function to calculate ordination with different methods
Usage
calculate_clustering(
abun_table,
metadata,
color_by,
distance = "euclidean",
cluster_algorithm = "ward.D2",
add_kmeans = FALSE,
k = 3,
plot = TRUE,
color_vector = NULL
)
Arguments
- abun_table
Feature abundance table
- k
Selecte K (for kmeans method)
- method
Clustering method