Multivariate analysis - Ordination
ordination_methods.RdFunction to calculate ordination with different methods
Usage
calculate_ordination(abun_table, method, distance = "bray", group = NULL)
nmds_ordination(abun_table, distance)
pca_ordination(abun_table)
pcoa_ordination(abun_table, distance)Arguments
- abun_table
Feature abundance table
- method
Ordination method
- distance
Dissimilarity distance to calculate. Available options are those from
vegan::vegdist()